
   13-Oct-2021 15:19:18 +0200

rootdir = Y:\Biophysics\Experiments\dRT-DC\210924_Faruq_2FLIBats\
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2058 cell sequences
cell traces covers the whole channel: 1263 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 80
write results (1183 cells):
----------
----------
1183 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2120 cell sequences
cell traces covers the whole channel: 1251 cell sequences
load video
{Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader/init', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 611)" style="font-weight:bold">VideoReader/init</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',611,0)">line 611</a>)
Unable to determine the codec required.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('VideoReader', 'C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m', 176)" style="font-weight:bold">VideoReader</a> (<a href="matlab: opentoline('C:\Program Files\MATLAB\R2018b\toolbox\matlab\audiovideo\@VideoReader\VideoReader.m',176,0)">line 176</a>)
            obj.init(fileName);

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 173)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',173,0)">line 173</a>)
    vr = VideoReader([filedir fileAvi.name]);
} 

   20-Oct-2021 11:28:14 +0200

rootdir = /Volumes/5360/Biophysics/Experiments/dRT-DC/210924_Faruq_2FLIBats/
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2058 cell sequences
cell traces covers the whole channel: 1263 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 80
write results (1183 cells):
----------
----------
1183 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2120 cell sequences
cell traces covers the whole channel: 1251 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 69
write results (1182 cells):
----------
----------
1182 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1966 cell sequences
cell traces covers the whole channel: 0 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 0
write results (0 cells):
----------

0 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 3202 cell sequences
cell traces covers the whole channel: 778 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 25
write results (753 cells):
----------
----------
753 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1615 cell sequences
cell traces covers the whole channel: 1063 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 53
write results (1010 cells):
----------
----------
1010 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2018 cell sequences
cell traces covers the whole channel: 0 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 0
write results (0 cells):
----------

0 cells written
measurement: /Volumes/5360/Biophysics/Experiments/dRT-DC/210924_Faruq_2FLIBats/bat1_8nlps_Cold/Online/
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2058	1263	1183	1183
2	2120	1251	1182	1182
3	1966	0	0	0
4	3202	778	753	753
5	1615	1063	1010	1010
6	2018	0	0	0

   8-Mar-2022 07:59:13 +0100

rootdir = ..\210924_Faruq_2FLIBats\
sampleName = 210924_Bat1_8nlps_Cold
measNums = 1 2 3 4 5 6 
frameNums = 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2058 cell sequences
cell traces covers the whole channel: 1265 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 80
write results (1185 cells):
----------
----------
1185 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2120 cell sequences
cell traces covers the whole channel: 1264 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 70
write results (1194 cells):
----------
----------
1194 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1966 cell sequences
cell traces covers the whole channel: 1077 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 66
write results (1011 cells):
----------
----------
1011 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 3202 cell sequences
cell traces covers the whole channel: 1768 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 73
write results (1695 cells):
----------
----------
1695 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1615 cell sequences
cell traces covers the whole channel: 1056 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 52
write results (1004 cells):
----------
----------
1004 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2018 cell sequences
cell traces covers the whole channel: 1230 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 59
write results (1171 cells):
----------
----------
1171 cells written
measurement: ..\210924_Faruq_2FLIBats\210924_Bat1_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2058	1265	1185	1185
2	2120	1264	1194	1194
3	1966	1077	1011	1011
4	3202	1768	1695	1695
5	1615	1056	1004	1004
6	2018	1230	1171	1171
